STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_1490KEGG: xac:XAC0889 hypothetical protein. (360 aa)    
Predicted Functional Partners:
Mlg_1491
Cysteine desulfuration protein SufE; PFAM: Fe-S metabolism associated SufE; KEGG: rru:Rru_A3475 Fe-S metabolism associated SufE.
  
    0.633
Mlg_1489
PFAM: band 7 protein; KEGG: tbd:Tbd_0490 stomatin-like transmembrane protein, band 7 protein.
       0.530
Mlg_1488
TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: pae:PA3738 integrase/recombinase XerD.
       0.527
Mlg_2457
PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: ilo:IL0248 hypothetical protein.
  
     0.519
Mlg_1597
PFAM: protein of unknown function DUF6, transmembrane; KEGG: pae:PA3474 conserved hypothetical protein.
 
     0.510
Mlg_1492
Hypothetical protein.
       0.485
Mlg_1493
PFAM: alpha/beta hydrolase fold; KEGG: mag:amb4214 lysophospholipase.
       0.419
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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