STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_1580TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: noc:Noc_2960 dihydrouridine synthase TIM-barrel protein YjbN. (343 aa)    
Predicted Functional Partners:
Mlg_0610
PFAM: helix-turn-helix, Fis-type; KEGG: sgl:SG0150 DNA-binding protein fis.
  
  
 0.744
Mlg_0854
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; KEGG: ppu:PP0606 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein.
      0.708
Mlg_1582
ErfK/YbiS/YcfS/YnhG; KEGG: csa:Csal_1565 ErfK/YbiS/YcfS/YnhG.
       0.545
Mlg_0565
Pantothenate synthetase; KEGG: ppu:PP4700 pantoate--beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase.
  
    0.534
Mlg_1581
PFAM: glutaredoxin 2; KEGG: mca:MCA1544 hypothetical protein.
       0.526
Mlg_1946
KEGG: noc:Noc_2118 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein.
  
  
 0.447
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
   
  
 0.441
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
  
 0.438
Mlg_2626
16S rRNA m(5)C-967 methyltransferase; TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: pae:PA0017 Sun protein.
  
 
 0.412
Mlg_1374
KEGG: vpa:VP1591 3-hydroxydecanoyl-(acyl-carrier-protein) dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ.
  
    0.408
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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