STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_1581PFAM: glutaredoxin 2; KEGG: mca:MCA1544 hypothetical protein. (80 aa)    
Predicted Functional Partners:
Mlg_1582
ErfK/YbiS/YcfS/YnhG; KEGG: csa:Csal_1565 ErfK/YbiS/YcfS/YnhG.
 
     0.811
Mlg_2102
KEGG: mca:MCA1634 ribonucleoside-diphosphate reductase, alpha subunit; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ATP-cone domain protein; Ribonucleotide reductase large subunit, N terminal domain protein.
  
 0.768
Mlg_1471
KEGG: mca:MCA2543 ribonucleoside reductase, intein-containing; TIGRFAM: Protein splicing (intein) site; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; SMART: Hedgehog/intein hint domain protein.
 
 0.683
Mlg_1470
KEGG: pae:PA5496 hypothetical protein.
  
 0.609
Mlg_1583
KEGG: csa:Csal_1564 hypothetical protein.
       0.572
Mlg_1780
KEGG: tbd:Tbd_2631 methionine sulfoxide reductase B; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B.
  
 
 0.555
Mlg_2457
PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: ilo:IL0248 hypothetical protein.
  
  
 0.534
Mlg_1580
TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: noc:Noc_2960 dihydrouridine synthase TIM-barrel protein YjbN.
       0.526
Mlg_0590
PFAM: type IV pilus assembly PilZ; KEGG: ade:Adeh_2982 hypothetical protein.
  
     0.506
Mlg_1809
KEGG: noc:Noc_2154 hypothetical protein.
  
     0.475
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.