STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_1727PFAM: peptidase M14, carboxypeptidase A; KEGG: syf:Synpcc7942_1581 peptidase M14, carboxypeptidase A. (573 aa)    
Predicted Functional Partners:
Mlg_2724
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC0139 TonB-dependent receptor.
  
     0.650
Mlg_1726
PFAM: glutamine amidotransferase, class-II; KEGG: pae:PA1307 hypothetical protein.
       0.538
Mlg_0878
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_04405 putative outer membrane receptor protein.
  
     0.519
Mlg_1738
Phosphate uptake regulator, PhoU; PFAM: PhoU family protein; KEGG: syf:Synpcc7942_1912 photosystem I reaction center subunit XII.
  
     0.419
Mlg_1725
HI0933 family protein; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pfl:PFL_5773 conserved hypothetical protein TIGR00275.
       0.412
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.