STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_2021KEGG: rsp:RSP_0503 HupJ, contains rubredoxin domain. (153 aa)    
Predicted Functional Partners:
Mlg_2024
PFAM: hydrogenase-1 expression HyaE; KEGG: rme:Rmet_1291 hydrogenase-1 expression HyaE.
 
  
 0.960
Mlg_2023
PFAM: HupH hydrogenase expression protein; KEGG: mca:MCA0161 hydrogenase expression/formation protein, putative.
 
  
 0.958
Mlg_2011
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rfr:Rfer_4120 uptake hydrogenase accessory protein HupU.
 
 
 0.953
Mlg_2026
Hydrogenase 1 maturation peptidase HyaD; TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; hydrogenase maturation peptidase superfamily; PFAM: peptidase M52, hydrogen uptake protein; KEGG: rme:Rmet_1293 hydrogenase expression/formation protein; Aspartic peptidase; MEROPS family A31.
 
  
 0.953
Mlg_2025
TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dar:Daro_3985 hydrogenase expression/formation protein (HUPF/HYPC).
 
  
 0.952
Mlg_2020
Hypothetical protein; KEGG: mag:amb1644 Ni,Fe-hydrogenase I large subunit.
 
  
 0.949
Mlg_2010
PFAM: nickel-dependent hydrogenase, large subunit; KEGG: mag:amb1942 uptake hydrogenase.
 
  
 0.939
Mlg_2022
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rme:Rmet_1289 rubredoxin-type Fe(Cys)4 protein.
 
   
 0.932
Mlg_2027
TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: dar:Daro_3987 nickel-dependent hydrogenase b-type cytochrome subunit.
 
  
 0.930
Mlg_2009
PAS/PAC sensor signal transduction histidine kinase; KEGG: dar:Daro_3946 PAS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
     0.919
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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