STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_2080PFAM: type II secretion system protein; KEGG: noc:Noc_0311 type II secretion system protein F. (417 aa)    
Predicted Functional Partners:
Mlg_2079
TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: noc:Noc_0312 type II secretion system protein E.
 
 0.987
Mlg_2081
PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: dar:Daro_0637 peptidase A24A, prepilin type IV:peptidase A24A, N-terminal; Aspartic peptidase; MEROPS family A24A.
 
  
 0.977
Mlg_2399
Type II secretion system protein E (GspE); KEGG: pae:PA3103 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
 0.945
Mlg_1571
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: tte:TTE1262 predicted ATPases involved in pili biogenesis, PilB homologs.
 
 0.944
Mlg_2082
KEGG: sgl:SG0461 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase.
       0.834
Mlg_2391
TIGRFAM: general secretion pathway protein G; PFAM: II secretion system protein G; KEGG: cvi:CV3811 general secretion pathway protein G.
 
  
 0.829
Mlg_0342
KEGG: noc:Noc_3004 pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
  
 0.818
Mlg_2083
PFAM: protein of unknown function DUF1342; KEGG: mca:MCA2091 hypothetical protein.
       0.814
Mlg_0343
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pae:PA0396 twitching motility protein PilU.
 
   
 0.805
Mlg_2755
TIGRFAM: type IV pilus assembly protein PilM; KEGG: pfo:Pfl_0405 type IV pilus assembly protein PilM.
 
 
 
 0.768
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.