STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlg_2134KEGG: pae:PA3911 hypothetical protein. (157 aa)    
Predicted Functional Partners:
Mlg_2135
PFAM: peptidase U32; KEGG: pae:PA3912 hypothetical protein.
 
  
 0.986
Mlg_2136
PFAM: peptidase U32; KEGG: yps:YPTB0495 putative protease.
 
  
 0.966
Mlg_1005
Signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: tbd:Tbd_1400 periplasmic sensor signal transduction histidine kinase.
 
     0.668
Mlg_1506
Hypothetical protein; KEGG: sde:Sde_2025 putative signal transduction protein.
  
     0.483
Mlg_0881
PFAM: protein of unknown function DUF1043; KEGG: sgl:SG0214 hypothetical protein.
  
     0.465
Mlg_1933
KEGG: pae:PA3880 hypothetical protein.
 
    0.460
Mlg_1078
PFAM: NosL family protein; KEGG: pae:PA3396 NosL protein.
  
    0.441
Mlg_1819
Exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: pae:PA3725 single-stranded-DNA-specific exonuclease RecJ.
  
     0.429
Mlg_1081
PFAM: NosL family protein; KEGG: pae:PA3396 NosL protein.
  
    0.418
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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