Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BN69_0801Heparinase II/III family protein. (572 aa)    
Predicted Functional Partners:
purH
Bifunctional purine biosynthesis protein purH.
       0.706
BN69_1997
Conserved hypothetical protein.
  
     0.658
BN69_1292
Integral membrane sensor signal transduction histidine kinase.
  
     0.615
BN69_1375
Heat shock protein DnaJ domain protein.
  
   
 0.606
BN69_3224
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.588
BN69_1769
Conserved hypothetical protein.
  
   
 0.545
BN69_0799
Uncharacterized protein.
       0.537
BN69_2153
Conserved hypothetical protein.
  
     0.537
BN69_0287
Conserved hypothetical protein.
  
     0.524
BN69_0829
Conserved hypothetical protein.
  
     0.520
Your Current Organism:
Methylocystis sp. SC2
NCBI taxonomy Id: 187303
Other names: M. sp. SC2
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