Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BN69_0806Conserved hypothetical protein. (83 aa)    
Predicted Functional Partners:
BN69_0805
Monooxygenase, FAD-binding.
 
     0.840
BN69_1792
Cytochrome c oxidase, subunit II.
    
   0.823
nuoD
NADH-quinone oxidoreductase subunit D (NADH dehydrogenase I subunit D); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
   
   0.785
BN69_0620
Conserved hypothetical protein.
  
     0.774
BN69_2029
Conserved hypothetical protein.
  
     0.774
BN69_3047
Invasion associated locus B family protein.
  
     0.774
BN69_3564
Putative integral membrane protein.
  
     0.772
BN69_0803
Transglutaminase family protein cysteine peptidase BTLCP.
  
     0.768
BN69_1470
Conserved hypothetical protein.
  
     0.767
nuoG
NADH-quinone oxidoreductase subunit G (NADH dehydrogenase I subunit G); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.
    
   0.763
Your Current Organism:
Methylocystis sp. SC2
NCBI taxonomy Id: 187303
Other names: M. sp. SC2
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