Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BN69_0907Transcriptional regulator, XRE family. (139 aa)    
Predicted Functional Partners:
BN69_0265
Conserved hypothetical membrane protein.
  
     0.663
BN69_3319
SmpA/OmlA domain-containing protein.
  
     0.645
BN69_0264
Conserved hypothetical transmembrane protein.
  
     0.636
BN69_1098
Methyltransferase type 11.
  
     0.628
BN69_0187
Integral membrane sensor signal transduction histidine kinase.
  
     0.626
BN69_3347
Conserved hypothetical protein.
  
     0.614
recO
DNA repair protein RecO (Recombination protein O); Involved in DNA repair and RecF pathway recombination.
  
    0.605
BN69_2947
DNA polymerase III, delta subunit.
  
     0.603
BN69_1346
Conserved hypothetical protein.
  
     0.583
BN69_3520
Conserved hypothetical protein.
  
     0.582
Your Current Organism:
Methylocystis sp. SC2
NCBI taxonomy Id: 187303
Other names: M. sp. SC2
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