STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN69_1069Transcriptional regulator, AraC family. (293 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.729
BN69_1801
Glutathione S-transferase domain.
 
   
 0.624
BN69_1071
GCN5-related N-acetyltransferase.
     
 0.609
BN69_1070
Conserved hypothetical protein.
       0.592
BN69_1805
Glutathione S-transferase domain containing transcription repressor.
 
     0.576
pdxJ
Pyridoxine 5'-phosphate synthase (PNP synthase); Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
       0.552
BN69_0854
Transcriptional regulator with PAS/PAC sensors, AraC family.
 
 
 0.536
BN69_0478
ThiJ/PfpI domain-containing protein.
 
 
 0.476
BN69_2814
Transcriptional regulator, AraC family.
 
 
 0.455
BN69_2756
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.441
Your Current Organism:
Methylocystis sp. SC2
NCBI taxonomy Id: 187303
Other names: M. sp. SC2
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.