Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BN69_1663Uncharacterized protein. (892 aa)    
Predicted Functional Partners:
BN69_1493
Conserved hypothetical protein.
 
 
   0.767
BN69_1494
Conserved hypothetical protein.
 
 
   0.762
BN69_1488
Phage major tail protein, TP901-1 family.
 
 
   0.761
BN69_1492
Phage-related minor tail protein or gene transfer agent orfg11 like protein.
 
  
 0.705
BN69_1484
Phage major capsid protein, HK97 family.
 
 
   0.686
BN69_1480
Phage head portal protein, HK97 family.
 
 
   0.683
BN69_1485
Conserved hypothetical protein.
 
 
   0.676
BN69_1487
Conserved hypothetical protein.
 
 
   0.656
BN69_1490
Conserved hypothetical protein.
 
     0.643
BN69_1477
Phage portal protein, HK97 family.
 
 
   0.639
Your Current Organism:
Methylocystis sp. SC2
NCBI taxonomy Id: 187303
Other names: M. sp. SC2
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