Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BN69_1978Iron permease FTR1. (277 aa)    
Predicted Functional Partners:
BN69_1979
Conserved hypothetical protein.
 
   
 0.959
BN69_0022
Cytochrome c family protein.
     
 0.743
BN69_3528
Putative cytochrome c family protein.
     
 0.743
BN69_3532
Acid phosphatase.
 
     0.547
BN69_0307
TonB-dependent siderophore receptor.
   
    0.503
BN69_2591
TonB-dependent receptor.
   
    0.503
BN69_1980
Uncharacterized protein.
       0.500
BN69_2831
Heavy metal translocating P-type ATPase.
     
 0.464
BN69_0016
TonB-dependent receptor.
   
    0.436
BN69_1872
TonB-dependent siderophore receptor.
   
    0.436
Your Current Organism:
Methylocystis sp. SC2
NCBI taxonomy Id: 187303
Other names: M. sp. SC2
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