Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BN69_2157Import inner membrane translocase subunit Tim44. (233 aa)    
Predicted Functional Partners:
BN69_2155
Smr protein/MutS2.
       0.819
BN69_2156
MltA domain protein.
       0.819
BN69_3520
Conserved hypothetical protein.
  
     0.763
BN69_0496
Disulfide bond formation protein DsbB.
  
     0.750
secB
Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
 
     0.726
BN69_2316
Aspartyl-trna synthetase.
  
     0.693
BN69_1767
Double-strand break repair protein AddB.
  
     0.668
BN69_1155
Conserved hypothetical protein.
  
     0.666
BN69_0759
Conserved hypothetical protein; Belongs to the UPF0335 family.
  
     0.626
atpF
H+transporting two-sector ATPase B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.624
Your Current Organism:
Methylocystis sp. SC2
NCBI taxonomy Id: 187303
Other names: M. sp. SC2
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