Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BN69_3166AsmA family protein. (608 aa)    
Predicted Functional Partners:
BN69_3299
Conserved hypothetical protein.
 
   
 0.767
BN69_0345
Conserved hypothetical protein.
  
     0.722
BN69_2145
Membrane protein involved in the export of O-antigen and teichoic acid-like protein.
  
   
 0.702
BN69_3392
Putative peptidoglycan-binding domain 1 protein.
  
     0.697
BN69_1504
Uncharacterized protein.
  
   
 0.695
BN69_0545
Conserved hypothetical protein.
 
    0.693
BN69_3046
Uncharacterized protein.
  
     0.689
BN69_0517
Transcription activator, effector binding.
  
     0.682
BN69_0890
Conserved hypothetical protein.
  
     0.653
BN69_1505
Uncharacterized protein.
  
     0.653
Your Current Organism:
Methylocystis sp. SC2
NCBI taxonomy Id: 187303
Other names: M. sp. SC2
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