STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ada_2Bifunctional transcriptional regulator/O6-methylguanine-DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)    
Predicted Functional Partners:
AQQ03394.1
Proline hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.897
ada_1
Bifunctional transcriptional activator/DNA repair enzyme protein Ada; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.732
AQQ05367.1
Alpha-ketoglutarate-dependent dioxygenase AlkB; Oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.722
rpoH_1
RNA polymerase factor sigma-32; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.
  
   0.685
rpoH_2
RNA polymerase factor sigma-32; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
  
   0.685
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
   0.685
AQQ05372.1
Bifunctional transcriptional regulator/O6-methylguanine-DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.664
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.579
alkB
Alkylated DNA repair dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.570
AQQ07511.1
Proline hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.548
Your Current Organism:
Labrenzia aggregata
NCBI taxonomy Id: 187304
Other names: ATCC 25650, Agrobacterium aggregatum, DSM 13394, IAM 12614, JCM 20685, L. aggregata, LMG 122, LMG:122, NBRC 16684, NCIMB 2208, Stappia aggregata, strain B1
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