STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjP_3ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)    
Predicted Functional Partners:
ycjO_2
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.966
malK_5
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 
 0.929
AQQ05088.1
Bicyclomycin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.913
AQQ05091.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.893
sugA_4
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.859
ycjO_3
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.849
ycjO_1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.846
AQQ05359.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.821
lacF_1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.794
ugpC
Sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 
 
 0.761
Your Current Organism:
Labrenzia aggregata
NCBI taxonomy Id: 187304
Other names: ATCC 25650, Agrobacterium aggregatum, DSM 13394, IAM 12614, JCM 20685, L. aggregata, LMG 122, LMG:122, NBRC 16684, NCIMB 2208, Stappia aggregata, strain B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.