STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
occPHistidine/lysine/arginine/ornithine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)    
Predicted Functional Partners:
hisQ_2
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.953
yecS_2
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.932
occM_2
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.923
hisQ_1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.922
yecS_1
Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.912
argT_1
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.905
oppD_1
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     
0.898
occM_1
Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.877
glnP_1
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.806
AQQ05354.1
Amino acid ABC transporter permease; With GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.800
Your Current Organism:
Labrenzia aggregata
NCBI taxonomy Id: 187304
Other names: ATCC 25650, Agrobacterium aggregatum, DSM 13394, IAM 12614, JCM 20685, L. aggregata, LMG 122, LMG:122, NBRC 16684, NCIMB 2208, Stappia aggregata, strain B1
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