STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQQ05937.1Phosphohistidine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)    
Predicted Functional Partners:
AQQ05935.1
TIGR01620 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.670
AQQ05936.1
Amino acid regulated cytosolic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.670
AQQ07602.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.592
AQQ05938.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.441
AQQ04653.1
Polyphosphate kinase 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.434
gltB_3
Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.422
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
     0.408
Your Current Organism:
Labrenzia aggregata
NCBI taxonomy Id: 187304
Other names: ATCC 25650, Agrobacterium aggregatum, DSM 13394, IAM 12614, JCM 20685, L. aggregata, LMG 122, LMG:122, NBRC 16684, NCIMB 2208, Stappia aggregata, strain B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.