KPH95248.1 protein (Pseudoalteromonas porphyrae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KPH95248.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)

Predicted Functional Partners:

KPH95249.1

0.876

KPH95247.1

0.869

KPH95250.1

0.748

KPH95251.1

0.423

Your Current Organism:

Pseudoalteromonas porphyrae

NCBI taxonomy Id: 187330
Other names: P. porphyrae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPH95247.1	KPH95248.1	AMS58_07790	AMS58_07795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
KPH95247.1	KPH95249.1	AMS58_07790	AMS58_07800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
KPH95247.1	KPH95250.1	AMS58_07790	AMS58_07805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	0.744
KPH95247.1	KPH95251.1	AMS58_07790	AMS58_07810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Inorganic phosphate transporter PiT family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
KPH95248.1	KPH95247.1	AMS58_07795	AMS58_07790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
KPH95248.1	KPH95249.1	AMS58_07795	AMS58_07800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
KPH95248.1	KPH95250.1	AMS58_07795	AMS58_07805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	0.748
KPH95248.1	KPH95251.1	AMS58_07795	AMS58_07810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Inorganic phosphate transporter PiT family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
KPH95249.1	KPH95247.1	AMS58_07800	AMS58_07790	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
KPH95249.1	KPH95248.1	AMS58_07800	AMS58_07795	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
KPH95249.1	KPH95250.1	AMS58_07800	AMS58_07805	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	0.748
KPH95249.1	KPH95251.1	AMS58_07800	AMS58_07810	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	Inorganic phosphate transporter PiT family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
KPH95250.1	KPH95247.1	AMS58_07805	AMS58_07790	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
KPH95250.1	KPH95248.1	AMS58_07805	AMS58_07795	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
KPH95250.1	KPH95249.1	AMS58_07805	AMS58_07800	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
KPH95250.1	KPH95251.1	AMS58_07805	AMS58_07810	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	Inorganic phosphate transporter PiT family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599
KPH95251.1	KPH95247.1	AMS58_07810	AMS58_07790	Inorganic phosphate transporter PiT family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
KPH95251.1	KPH95248.1	AMS58_07810	AMS58_07795	Inorganic phosphate transporter PiT family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
KPH95251.1	KPH95249.1	AMS58_07810	AMS58_07800	Inorganic phosphate transporter PiT family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
KPH95251.1	KPH95250.1	AMS58_07810	AMS58_07805	Inorganic phosphate transporter PiT family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	0.599