OCP08734.1 protein (Ensifer sp. LC11) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OCP08734.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)

Predicted Functional Partners:

OCP08733.1

0.648

OCP11587.1

0.596

OCP11271.1

0.533

OCP08735.1

0.466

OCP03804.1

0.463

OCO98081.1

0.439

OCP06117.1

0.438

OCP03911.1

0.415

OCP01029.1

0.406

OCP02602.1

0.404

Your Current Organism:

Ensifer sp. LC11

NCBI taxonomy Id: 1873712
Other names: E. sp. LC11

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OCO98081.1	OCP03911.1	BBX50_11030	BBX50_26270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
OCO98081.1	OCP06117.1	BBX50_11030	BBX50_23885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
OCO98081.1	OCP08734.1	BBX50_11030	BBX50_19600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
OCO98081.1	OCP11271.1	BBX50_11030	BBX50_18935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
OCO98081.1	OCP11587.1	BBX50_11030	BBX50_18355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.729
OCP01029.1	OCP08734.1	BBX50_07655	BBX50_19600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
OCP02602.1	OCP03804.1	BBX50_27850	BBX50_26515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TIGR02301 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
OCP02602.1	OCP06117.1	BBX50_27850	BBX50_23885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
OCP02602.1	OCP08734.1	BBX50_27850	BBX50_19600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
OCP02602.1	OCP11271.1	BBX50_27850	BBX50_18935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
OCP02602.1	OCP11587.1	BBX50_27850	BBX50_18355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
OCP03804.1	OCP02602.1	BBX50_26515	BBX50_27850	TIGR02301 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
OCP03804.1	OCP06117.1	BBX50_26515	BBX50_23885	TIGR02301 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
OCP03804.1	OCP08734.1	BBX50_26515	BBX50_19600	TIGR02301 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
OCP03804.1	OCP11271.1	BBX50_26515	BBX50_18935	TIGR02301 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649
OCP03804.1	OCP11587.1	BBX50_26515	BBX50_18355	TIGR02301 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
OCP03911.1	OCO98081.1	BBX50_26270	BBX50_11030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
OCP03911.1	OCP06117.1	BBX50_26270	BBX50_23885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
OCP03911.1	OCP08734.1	BBX50_26270	BBX50_19600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
OCP03911.1	OCP11271.1	BBX50_26270	BBX50_18935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468