STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nacConserved protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. (117 aa)    
Predicted Functional Partners:
rpl13/rps9
Ribosomal protein S16 (E.coli); L13 protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (By similarity).
   
 
 0.999
rpl18e
Ribosomal protein L18 (E.coli); Function Code:10.04 - Metabolism of Macromolecules, Ribosomal proteins; similar to, sp:LN:R18E_METJA AC:P54022, p()=2.2E-31, pid=52%; Belongs to the eukaryotic ribosomal protein eL18 family.
  
 
 0.991
rpl21e
Ribosomal protein L21; Function Code:10.04 - Metabolism of Macromolecules, Ribosomal proteins; similar to, sp:LN:RL21_METJA AC:P54013, p()=8E-25, pid=50%; Belongs to the eukaryotic ribosomal protein eL21 family.
  
   0.988
rps3ae
Ribosomal protein S3a; Function Code:10.04 - Metabolism of Macromolecules, Ribosomal proteins; similar to, sp:LN:RS3A_METJA AC:P54059, p()=4.7E-36, pid=39%; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 
 0.985
rpl18a
Ribosomal protein L18a; Function Code:10.04 - Metabolism of Macromolecules, Ribosomal proteins; similar to, sp:LN:RLX_METJA AC:P54052, p()=0.000000056, pid=39%.
   
 
 0.983
rpl18
Ribosomal protein L5; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
  
 
 0.981
rpl19e
Ribosomal protein L19; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
  
   0.974
rpl30
Ribosomal protein L7 (E.coli); Function Code:10.04 - Metabolism of Macromolecules, Ribosomal proteins; similar to, sp:LN:RL30_METJA AC:P54046, p()=8E-41, pid=52%.
 
   0.974
rpl31e
Ribosomal protein L31; Function Code:10.04 - Metabolism of Macromolecules, Ribosomal proteins; similar to, sp:LN:RL31_METJA AC:P54009, p()=4.7E-20, pid=45%; Belongs to the eukaryotic ribosomal protein eL31 family.
  
 
 0.972
rpl23
Ribosomal protein L23a (E.coli); Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.
   
 
 0.970
Your Current Organism:
Methanothermobacter thermautotrophicus
NCBI taxonomy Id: 187420
Other names: M. thermautotrophicus str. Delta H, Methanobacterium thermoautotrophicum str. Delta H, Methanobacterium thermoautotrophicum str. deltaH, Methanothermobacter thermautotrophicus str. Delta H, Methanothermobacter thermautotrophicus str. deltaH
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.