STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTH_1793Unknown; Function Code:14.00 - Unknown; similar to, sp:LN:Y01E_MYCTU AC:Q10516, p()=0.0015, pid=12%. (233 aa)    
Predicted Functional Partners:
rpl13/rps9
Ribosomal protein S16 (E.coli); L13 protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (By similarity).
 
    0.770
MTH_1794
Unknown; Function Code:14.00 - Unknown; similar to, pir:LN:C39487 AC:C39487, p()=0.44, pid=13%.
       0.636
moaA
Molybdenum cofactor biosynthesis MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate; Belongs to the radical SAM superfamily. MoaA family.
  
    0.527
MTH_62
Molybdenum cofactor biosynthesis A (MoaA) related protein; Function Code:9.11 - Metabolism of Cofactors and Vitamins,Molybdopterin; similar to, pir:LN:F64503 AC:F64503, p()=1.3E-56, pid=44%.
  
    0.527
MTH_1792
dTDP-4-dehydrorhamnose reductase; Function Code:1.05 - Carbohydrate Metabolism, Fructose and mannose metabolism; similar to, gp:GI:g1881547 LN:SPU09239, p()=8.7E-51, pid=39%.
       0.523
MTH_1791
Glucose-1-phosphate thymidylyltransferase; Function Code:4.03 - Nucleotide Metabolism, Nucleotide sugars metabolism; similar to, sp:LN:RFBA_YEREN AC:P55257, p()=7.3E-102, pid=64%.
     
 0.522
MTH_1789
dTDP-glucose 4,6-dehydratase; Function Code:1.05 - Carbohydrate Metabolism, Fructose and mannose metabolism; similar to, gp:GI:g1666507 LN:LIU61226, p()=7.5E-100, pid=56%.
       0.514
MTH_1796
Conserved protein; Function Code:14.01 - Unknown, Conserved protein; similar to, sp:LN:YA16_HAEIN AC:P44095, p()=0.00000001, pid=16%.
       0.514
MTH_1795
Transcriptional regulator; Function Code:10.02 - Metabolism of Macromolecules, Transcription--mRNA synthesis and modification (includes regulators); similar to, gp:GI:g495647, p()=1.1E-18, pid=23%.
  
    0.505
rmlC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
       0.491
Your Current Organism:
Methanothermobacter thermautotrophicus
NCBI taxonomy Id: 187420
Other names: M. thermautotrophicus str. Delta H, Methanobacterium thermoautotrophicum str. Delta H, Methanobacterium thermoautotrophicum str. deltaH, Methanothermobacter thermautotrophicus str. Delta H, Methanothermobacter thermautotrophicus str. deltaH
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