STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTH_206Unknown; Function Code:14.00 - Unknown; similar to, gp_new:GI:e315172:g2078069, p()=0.75, pid=21%. (79 aa)    
Predicted Functional Partners:
MTH_205
Hydrogenase expression/formation protein HypE; Function Code:2.02 - Energy Metabolism, Methane metabolism; similar to, pir:LN:D64384 AC:D64384, p()=3.2E-92, pid=45%.
       0.718
MTH_204
Conserved protein; Function Code:14.01 - Unknown, Conserved protein; similar to, sp:LN:YGFA_ECOLI AC:P09160, p()=0.00076, pid=12%.
       0.664
rps8e
Ribosomal protein S8; Function Code:10.04 - Metabolism of Macromolecules, Ribosomal proteins; similar to, sp:LN:RS8E_METJA AC:P54055, p()=6.2E-34, pid=51%.
       0.572
polB2
DNA-dependent DNA polymerase family B (PolB2); In addition to polymerase activity, this DNA polymerase exhibits 3'-5' exonuclease activity.
       0.534
Your Current Organism:
Methanothermobacter thermautotrophicus
NCBI taxonomy Id: 187420
Other names: M. thermautotrophicus str. Delta H, Methanobacterium thermoautotrophicum str. Delta H, Methanobacterium thermoautotrophicum str. deltaH, Methanothermobacter thermautotrophicus str. Delta H, Methanothermobacter thermautotrophicus str. deltaH
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