STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDP-D-mannose dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (348 aa)    
Predicted Functional Partners:
MTH_334
Perosamine synthetase; Function Code:11.04 - Cell envelope, Murein sacculus and peptidoglycan; similar to, gp:GI:g1911763 LN:S83460, p()=3.8E-89, pid=45%; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.984
MTH_1759
Mannose-1-phosphate guanyltransferase; Function Code:4.03 - Nucleotide Metabolism, Nucleotide sugars metabolism; similar to, gp:GI:g1653786 LN:D90916, p()=1.9E-64, pid=36%.
    
 0.923
MTH_332
LPS biosynthesis RfbU related protein; Function Code:11.04 - Cell envelope, Murein sacculus and peptidoglycan; similar to, pir:LN:H64446 AC:H64446, p()=4.5E-18, pid=22%.
  
  
 0.843
MTH_335
Galactosyl-transferase RfpB related protein; Function Code:11.04 - Cell envelope, Murein sacculus and peptidoglycan; similar to, pir:LN:H64446 AC:H64446, p()=2.9E-15, pid=16%.
  
  
 0.843
MTH_336
Conserved protein; Function Code:14.01 - Unknown, Conserved protein; similar to, pir:LN:F64450 AC:F64450, p()=0.00066, pid=17%.
     
 0.828
MTH_337
Unknown; Function Code:14.00 - Unknown.
       0.773
MTH_352
Conserved protein; Function Code:14.01 - Unknown, Conserved protein; similar to, pir:LN:A64502 AC:A64502, p()=3.9E-16, pid=30%.
  
  
 0.718
MTH_1523
Glucose-1-phosphate adenylyltransferase related protein; Function Code:4.03 - Nucleotide Metabolism, Nucleotide sugars metabolism; similar to, sp:LN:MPG1_YEAST AC:P41940, p()=2E-21, pid=20%.
     
 0.704
MTH_340
Conserved protein; Function Code:14.01 - Unknown, Conserved protein; similar to, sp:LN:AMSJ_ERWAM AC:Q46637, p()=1.2E-11, pid=14%.
  
  
 0.695
MTH_1792
dTDP-4-dehydrorhamnose reductase; Function Code:1.05 - Carbohydrate Metabolism, Fructose and mannose metabolism; similar to, gp:GI:g1881547 LN:SPU09239, p()=8.7E-51, pid=39%.
     
 0.683
Your Current Organism:
Methanothermobacter thermautotrophicus
NCBI taxonomy Id: 187420
Other names: M. thermautotrophicus str. Delta H, Methanobacterium thermoautotrophicum str. Delta H, Methanobacterium thermoautotrophicum str. deltaH, Methanothermobacter thermautotrophicus str. Delta H, Methanothermobacter thermautotrophicus str. deltaH
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