STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTH_559Conserved protein; Function Code:14.01 - Unknown, Conserved protein; similar to, pir:LN:D64442 AC:D64442, p()=1E-31, pid=31%. (232 aa)    
Predicted Functional Partners:
MTH_560
Conserved protein; Function Code:14.01 - Unknown, Conserved protein; similar to, pir:LN:F64440 AC:F64440, p()=9.1E-56, pid=41%.
       0.804
MTH_558
Unknown; Function Code:14.00 - Unknown; similar to, sp:LN:CH60_TREPA AC:P23033, p()=0.92, pid=17%.
       0.798
MTH_557
Unknown; Function Code:14.00 - Unknown; similar to, sp:LN:Y214_METJA AC:Q57667, p()=0.014, pid=27%.
       0.675
MTH_1216
Function Code:9.05 - Metabolism of Cofactors and Vitamins, Pantothenate and CoA biosynthesis; similar to, pir:LN:A64414 AC:A64414, p()=6.1E-66, pid=38%.
       0.436
rpoK
DNA-dependent RNA polymerase, subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family.
       0.436
MTH_556
Magnesium chelatase subunit ChlI; Function Code:9.10 - Metabolism of Cofactors and Vitamins, Porphyrin and chlorophyll metabolism; similar to, pir:LN:G64413 AC:G64413, p()=1.7E-93, pid=45%.
       0.413
MTH_1488
Unknown; Function Code:14.00 - Unknown; similar to, gp:GI:g1789452 LN:ECAE000389, p()=0.0052, pid=17%.
 
     0.404
Your Current Organism:
Methanothermobacter thermautotrophicus
NCBI taxonomy Id: 187420
Other names: M. thermautotrophicus str. Delta H, Methanobacterium thermoautotrophicum str. Delta H, Methanobacterium thermoautotrophicum str. deltaH, Methanothermobacter thermautotrophicus str. Delta H, Methanothermobacter thermautotrophicus str. deltaH
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