STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MTH_889Conserved protein; Function Code:14.01 - Unknown, Conserved protein; similar to, pir:LN:H64339 AC:H64339, p()=1.1E-29, pid=61%. (97 aa)    
Predicted Functional Partners:
MTH_561
Conserved protein; Function Code:14.01 - Unknown, Conserved protein; similar to, pir:LN:E64380 AC:E64380, p()=0.00000019, pid=18%.
 
     0.814
MTH_887
Conserved protein; Function Code:14.01 - Unknown, Conserved protein; similar to, pir:LN:B64499 AC:B64499, p()=1.5E-18, pid=19%.
 
     0.813
MTH_888
Conserved protein; Function Code:14.01 - Unknown, Conserved protein; similar to, pir:LN:D64380 AC:D64380, p()=6.3E-25, pid=30%.
       0.794
MTH_892
ATP-dependent protease LA related protein; Function Code:10.12 - Metabolism of Macromolecules, Degradation of proteins--peptides--and glycopeptides; similar to, pir:LN:H64476 AC:H64476, p()=1.2E-42, pid=19%; Belongs to the peptidase S16 family.
 
     0.623
MTH_890
Conserved protein; Function Code:14.01 - Unknown, Conserved protein; similar to, pir:LN:F64502 AC:F64502, p()=4.5E-15, pid=24%.
 
     0.621
tfb
Transcription initiation factor TFIIB; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).
       0.559
MTH_886
Conserved protein; Function Code:14.01 - Unknown, Conserved protein; similar to, sp:LN:GAR1_SCHPO AC:Q06975, p()=0.0000072, pid=23%; To M.jannaschii MJ0782.1.
       0.559
dnaG
Conserved protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
 
     0.502
MTH_967
Conserved protein; Function Code:14.01 - Unknown, Conserved protein; similar to, pir:LN:C64445 AC:C64445, p()=6.7E-44, pid=34%.
  
     0.476
rpl39e
Ribosomal protein L39; Function Code:10.04 - Metabolism of Macromolecules, Ribosomal proteins; similar to, sp:LN:RL39_METJA, p()=9.70E-13, pid=%; Belongs to the eukaryotic ribosomal protein eL39 family.
  
     0.464
Your Current Organism:
Methanothermobacter thermautotrophicus
NCBI taxonomy Id: 187420
Other names: M. thermautotrophicus str. Delta H, Methanobacterium thermoautotrophicum str. Delta H, Methanobacterium thermoautotrophicum str. deltaH, Methanothermobacter thermautotrophicus str. Delta H, Methanothermobacter thermautotrophicus str. deltaH
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.