STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alcAllantoicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the allantoicase family. (332 aa)    
Predicted Functional Partners:
APR68376.1
Ureidoglycolate hydrolase; Catalyzes the formation of glyoxylate from (S)-ureidoglycolate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.994
APR68378.1
OHCU decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.992
APR68377.1
Hydroxyisourate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
  
 0.933
ureA
Urease subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the urease gamma subunit family.
    
  0.905
ureB
Urease subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the urease beta subunit family.
    
  0.905
ureC
Urease subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.905
APR68374.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.866
APR68380.1
Xanthine dehydrogenase accessory protein XdhC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.847
APR68381.1
Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.847
APR68375.1
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
     0.832
Your Current Organism:
Thalassolituus oleivorans
NCBI taxonomy Id: 187493
Other names: DSM 14913, LMG 21420, LMG:21420, T. oleivorans, Thalassolituus oleivorans Yakimov et al. 2004, strain MIL-1
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