STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC04168.1Sugar lactone lactonase YvrE. (309 aa)    
Predicted Functional Partners:
SDC04219.1
Uronate dehydrogenase.
 
   
 0.899
SDD82240.1
Sugar lactone lactonase YvrE.
  
  
 
0.894
SDC03954.1
Gluconolactonase.
 
  
  0.859
SDD03819.1
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
  
 0.858
SDC04083.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
  0.659
SDC04264.1
DNA-binding transcriptional regulator, FadR family.
 
   
 0.638
SDE34499.1
Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
    
  0.619
SDB99034.1
Gluconokinase.
 
  
 0.606
SDC04125.1
Tripartite ATP-independent transporter solute receptor, DctP family.
       0.578
SDD22251.1
3-oxoacyl-[acyl-carrier protein] reductase.
    
 0.568
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
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