STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC15086.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (252 aa)    
Predicted Functional Partners:
SDD25218.1
Glutamate synthase (NADH) large subunit.
     
 0.813
SDD31921.1
Nonribosomal peptide synthetase DhbF.
  
 0.801
SDC50058.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
 0.782
SDC69033.1
Non-ribosomal peptide synthetase component F.
  
 0.733
SDE76096.1
Acyl carrier protein.
  
 0.733
SDE76064.1
Acyl transferase domain-containing protein.
  
 0.712
SDC15029.1
iron(III) transport system substrate-binding protein.
       0.666
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
      0.614
SDD54491.1
[acyl-carrier-protein] S-malonyltransferase.
  
 0.610
SDC78837.1
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase.
    
 0.594
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
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