STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC15355.1Uncharacterized domain 1-containing protein. (162 aa)    
Predicted Functional Partners:
SDC15491.1
Uncharacterized domain 1-containing protein.
 
     0.668
SDB98776.1
Uncharacterized domain 1-containing protein.
  
     0.641
SDC15298.1
Hypothetical protein.
 
    0.611
SDD04756.1
Barstar (barnase inhibitor).
  
     0.588
SDC15402.1
Gluconate 5-dehydrogenase.
  
    0.551
SDE51399.1
Branched-chain amino acid transport system substrate-binding protein.
  
     0.531
SDC15448.1
butyryl-CoA dehydrogenase.
       0.516
SDC15247.1
ElaA protein.
       0.500
SDE36627.1
Uncharacterized domain 1-containing protein.
 
     0.494
SDE03875.1
phenylacetate-CoA ligase.
    
 0.486
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.