STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB99870.1Protein kinase domain-containing protein. (383 aa)    
Predicted Functional Partners:
SDD31355.1
Hypothetical protein.
   
 0.858
SDE73116.1
Signal transduction histidine kinase.
  
 0.812
SDE01418.1
GAF domain-containing protein.
    
 0.806
SDE68424.1
Two-component system, unclassified family, sensor histidine kinase and response regulator.
   
 0.803
SDE60624.1
PAS domain S-box-containing protein.
    
 0.785
SDC12363.1
Two-component system, chemotaxis family, CheB/CheR fusion protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
    
 0.774
SDC18759.1
Response regulator receiver domain-containing protein.
    
 0.774
SDC41378.1
Hypothetical protein.
  
     0.773
SDC69688.1
PAS domain S-box-containing protein.
  
 
 0.744
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
 
 0.729
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.