STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC22218.1Diguanylate cyclase (GGDEF) domain-containing protein. (408 aa)    
Predicted Functional Partners:
SDE68424.1
Two-component system, unclassified family, sensor histidine kinase and response regulator.
 
 0.902
SDE73116.1
Signal transduction histidine kinase.
 
 0.887
SDC81986.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.883
SDC58274.1
Diguanylate cyclase/phosphodiesterase.
0.876
SDC71740.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
0.876
SDD31355.1
Hypothetical protein.
  
 
 0.873
SDE01353.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 0.866
SDD31173.1
Response regulator receiver domain-containing protein.
  
 0.830
SDD58605.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.825
SDD65853.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 0.804
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.