STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC00876.1NlpC/P60 family protein. (177 aa)    
Predicted Functional Partners:
SDE48008.1
Flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
   0.589
SDE12364.1
Lytic murein transglycosylase.
     
 0.518
SDC00830.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
       0.509
SDC00789.1
Nicotinamidase-related amidase.
       0.451
SDE26822.1
Glycosyltransferase, GT2 family.
     
 0.447
SDB99096.1
OmpA family protein.
  
 
 0.445
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
 
   
 0.423
SDE24771.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
  
 0.418
SDC13171.1
OmpA-OmpF porin, OOP family.
 
 
 0.405
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.