STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC42503.1Integrating conjugative element membrane protein, PFL_4702 family. (122 aa)    
Predicted Functional Partners:
SDC42641.1
Integrating conjugative element protein, PFL_4704 family.
 
     0.965
SDC42694.1
Integrating conjugative element protein, PFL_4705 family.
 
     0.965
SDC42732.1
Conjugative transfer region lipoprotein, TIGR03751 family.
 
     0.965
SDC42791.1
Conjugative transfer ATPase, PFL_4706 family.
 
     0.965
SDC42554.1
Conjugative transfer region protein, TIGR03750 family.
 
     0.962
SDC42595.1
Integrating conjugative element protein, PFL_4703 family.
 
     0.957
SDC42831.1
Protein-disulfide isomerase.
 
     0.956
SDC42416.1
Integrative conjugative element protein, RAQPRD family.
       0.817
SDE63523.1
Integrating conjugative element protein, PFL_4703 family.
 
     0.811
SDC42456.1
Integrating conjugative element protein, PFL_4701 family.
       0.809
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.