Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDC54374.1Aspartyl/Asparaginyl beta-hydroxylase. (281 aa)    
Predicted Functional Partners:
SDC54417.1
Hypothetical protein.
 
     0.955
SDC54516.1
Microcystin-dependent protein.
 
     0.920
SDC54473.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
 
     0.819
SDC03768.1
Phytanoyl-CoA dioxygenase (PhyH).
 
  
 0.810
SDC89299.1
Microcystin-dependent protein.
 
     0.672
SDC54317.1
Collagen triple helix repeat-containing protein.
       0.618
SDE46573.1
Chemotaxis protein MotA.
    
   0.524
SDC07966.1
Hypothetical protein.
  
     0.517
SDD00318.1
Cupin domain-containing protein.
 
 0.506
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.495
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.