STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC57013.1Hypothetical protein. (371 aa)    
Predicted Functional Partners:
SDC56972.1
Hypothetical protein.
     0.942
SDC15610.1
3-hydroxyacyl-CoA dehydrogenase.
 
 0.929
SDE24047.1
3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.919
SDE26440.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.879
SDD41014.1
Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.798
SDE23881.1
Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.797
SDD32551.1
Electron transfer flavoprotein alpha subunit apoprotein.
 
 0.768
SDE23659.1
Electron transfer flavoprotein alpha subunit apoprotein.
 
 0.768
SDE51810.1
Electron transfer flavoprotein alpha subunit apoprotein.
 
 0.768
SDE65632.1
Electron transfer flavoprotein alpha subunit apoprotein.
 
 0.768
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.