STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC70405.1Hypothetical protein. (338 aa)    
Predicted Functional Partners:
SDC70361.1
Serine/threonine protein phosphatase PrpC.
 
 0.975
SDE12105.1
Serine/threonine protein phosphatase PrpC.
 
 0.885
SDE09476.1
Stage II sporulation protein E (SpoIIE).
 
 0.879
SDD08497.1
Protein phosphatase.
 
 0.877
SDD08536.1
FHA domain-containing protein.
 
 
 
 0.858
SDD31355.1
Hypothetical protein.
   
 0.858
SDE73116.1
Signal transduction histidine kinase.
  
 0.812
SDE01418.1
GAF domain-containing protein.
    
 0.806
SDE68424.1
Two-component system, unclassified family, sensor histidine kinase and response regulator.
   
 0.803
SDE60624.1
PAS domain S-box-containing protein.
    
 0.785
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.