STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD09701.1ATPase family associated with various cellular activities (AAA). (388 aa)    
Predicted Functional Partners:
SDD09735.1
Subtilase family protein.
 
    0.955
SDD09834.1
Superfamily I DNA or RNA helicase; Belongs to the helicase family. UvrD subfamily.
 
     0.918
SDD09884.1
Multiubiquitin.
 
     0.859
SDD09918.1
Molybdopterin or thiamine biosynthesis adenylyltransferase.
 
     0.852
SDE63893.1
Hypothetical protein.
  
     0.702
SDD99584.1
Outer membrane protein (porin).
  
     0.695
SDD09767.1
Hypothetical protein.
       0.630
SDD09802.1
Hypothetical protein.
       0.619
SDE64000.1
Hypothetical protein.
  
     0.523
SDB99519.1
Putative ABC transport system ATP-binding protein.
  
     0.410
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.