SDD12622.1 protein (Acidovorax valerianellae)

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Score

SDD12622.1

Effector-binding domain-containing protein. (154 aa)

Predicted Functional Partners:

rpoB

0.926

rpoZ

0.788

rpoA

0.788

rpoC

0.788

SDD12580.1

0.619

rpoH

0.589

rpoD

0.589

SDD12666.1

0.434

Your Current Organism:

Acidovorax valerianellae

NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDD12580.1	SDD12622.1	SAMN05192589_104360	SAMN05192589_104361	PhnB protein.	Effector-binding domain-containing protein.	0.619
SDD12622.1	SDD12580.1	SAMN05192589_104361	SAMN05192589_104360	Effector-binding domain-containing protein.	PhnB protein.	0.619
SDD12622.1	SDD12666.1	SAMN05192589_104361	SAMN05192589_104362	Effector-binding domain-containing protein.	Hypothetical protein; Belongs to the pirin family.	0.434
SDD12622.1	rpoA	SAMN05192589_104361	SAMN05192589_11160	Effector-binding domain-containing protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.788
SDD12622.1	rpoB	SAMN05192589_104361	SAMN05192589_1299	Effector-binding domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.926
SDD12622.1	rpoC	SAMN05192589_104361	SAMN05192589_12910	Effector-binding domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.788
SDD12622.1	rpoD	SAMN05192589_104361	SAMN05192589_10837	Effector-binding domain-containing protein.	RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.589
SDD12622.1	rpoH	SAMN05192589_104361	SAMN05192589_103255	Effector-binding domain-containing protein.	RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.	0.589
SDD12622.1	rpoZ	SAMN05192589_104361	SAMN05192589_10334	Effector-binding domain-containing protein.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.788
SDD12666.1	SDD12622.1	SAMN05192589_104362	SAMN05192589_104361	Hypothetical protein; Belongs to the pirin family.	Effector-binding domain-containing protein.	0.434
rpoA	SDD12622.1	SAMN05192589_11160	SAMN05192589_104361	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Effector-binding domain-containing protein.	0.788
rpoA	rpoB	SAMN05192589_11160	SAMN05192589_1299	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoC	SAMN05192589_11160	SAMN05192589_12910	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoD	SAMN05192589_11160	SAMN05192589_10837	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.995
rpoA	rpoH	SAMN05192589_11160	SAMN05192589_103255	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.	0.986
rpoA	rpoZ	SAMN05192589_11160	SAMN05192589_10334	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.999
rpoB	SDD12622.1	SAMN05192589_1299	SAMN05192589_104361	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Effector-binding domain-containing protein.	0.926
rpoB	rpoA	SAMN05192589_1299	SAMN05192589_11160	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoC	SAMN05192589_1299	SAMN05192589_12910	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoD	SAMN05192589_1299	SAMN05192589_10837	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.995