STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD21656.1Rhs element Vgr protein. (219 aa)    
Predicted Functional Partners:
SDE62102.1
Rhs element Vgr protein.
  
  0.973
SDE45624.1
Rhs element Vgr protein.
  
  0.972
SDE09572.1
Type VI secretion system protein ImpK.
 
  
 0.936
SDE09898.1
Type VI secretion system protein ImpH.
 
 
 0.889
SDE09711.1
Type VI secretion system protein ImpB.
 
  
 0.880
SDE09673.1
Type VI secretion system protein ImpA.
 
  
 0.878
SDE09295.1
Type VI secretion system secreted protein Hcp.
 
  
 0.877
SDE09750.1
Type VI secretion system protein ImpC.
 
  
 0.850
SDE80430.1
Gp5 C-terminal repeat-containing protein.
 
  
  0.841
SDE09819.1
Type VI secretion system protein ImpF.
 
  
 0.840
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
Server load: low (20%) [HD]