STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD58937.1Uncharacterized membrane protein. (417 aa)    
Predicted Functional Partners:
SDD58980.1
Xanthine dehydrogenase accessory factor.
 
     0.863
SDD59061.1
5-hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
  
 0.831
SDD59465.1
Putative urate catabolism protein.
 
    0.799
SDD58482.1
Xanthine dehydrogenase, molybdenum binding subunit apoprotein.
 
     0.755
SDD58447.1
Xanthine dehydrogenase small subunit.
 
     0.738
SDC72168.1
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
     0.721
SDD27300.1
Transcriptional regulator, TetR family.
  
     0.408
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
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