Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDC06982.1 | SDC12266.1 | SAMN05192589_101192 | SAMN05192589_101289 | Histidine kinase. | His Kinase A (phospho-acceptor) domain-containing protein. | 0.987 |
SDC06982.1 | SDC18540.1 | SAMN05192589_101192 | SAMN05192589_101412 | Histidine kinase. | PAS/PAC sensor hybrid histidine kinase. | 0.977 |
SDC06982.1 | SDD31623.1 | SAMN05192589_101192 | SAMN05192589_105219 | Histidine kinase. | GAF domain-containing protein. | 0.565 |
SDC06982.1 | SDE16772.1 | SAMN05192589_101192 | SAMN05192589_11324 | Histidine kinase. | Two-component system, OmpR family, KDP operon response regulator KdpE. | 0.884 |
SDC06982.1 | kdpA | SAMN05192589_101192 | SAMN05192589_11320 | Histidine kinase. | K+-transporting ATPase ATPase A chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane. | 0.474 |
SDC06982.1 | kdpB | SAMN05192589_101192 | SAMN05192589_11321 | Histidine kinase. | K+-transporting ATPase ATPase B chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily. | 0.531 |
SDC06982.1 | kdpC | SAMN05192589_101192 | SAMN05192589_11322 | Histidine kinase. | K+-transporting ATPase ATPase C chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex. | 0.581 |
SDC12266.1 | SDC06982.1 | SAMN05192589_101289 | SAMN05192589_101192 | His Kinase A (phospho-acceptor) domain-containing protein. | Histidine kinase. | 0.987 |
SDC12266.1 | SDC18540.1 | SAMN05192589_101289 | SAMN05192589_101412 | His Kinase A (phospho-acceptor) domain-containing protein. | PAS/PAC sensor hybrid histidine kinase. | 0.999 |
SDC12266.1 | SDC69388.1 | SAMN05192589_101289 | SAMN05192589_1039 | His Kinase A (phospho-acceptor) domain-containing protein. | His Kinase A (phospho-acceptor) domain-containing protein. | 0.412 |
SDC12266.1 | SDC85304.1 | SAMN05192589_101289 | SAMN05192589_103381 | His Kinase A (phospho-acceptor) domain-containing protein. | Two-component system, NtrC family, sensor histidine kinase GlrK. | 0.412 |
SDC12266.1 | SDD31623.1 | SAMN05192589_101289 | SAMN05192589_105219 | His Kinase A (phospho-acceptor) domain-containing protein. | GAF domain-containing protein. | 0.992 |
SDC12266.1 | SDE16732.1 | SAMN05192589_101289 | SAMN05192589_11323 | His Kinase A (phospho-acceptor) domain-containing protein. | Two-component system, OmpR family, sensor histidine kinase KdpD. | 0.412 |
SDC12266.1 | SDE16772.1 | SAMN05192589_101289 | SAMN05192589_11324 | His Kinase A (phospho-acceptor) domain-containing protein. | Two-component system, OmpR family, KDP operon response regulator KdpE. | 0.730 |
SDC12266.1 | kdpA | SAMN05192589_101289 | SAMN05192589_11320 | His Kinase A (phospho-acceptor) domain-containing protein. | K+-transporting ATPase ATPase A chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane. | 0.676 |
SDC12266.1 | kdpB | SAMN05192589_101289 | SAMN05192589_11321 | His Kinase A (phospho-acceptor) domain-containing protein. | K+-transporting ATPase ATPase B chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily. | 0.763 |
SDC12266.1 | kdpC | SAMN05192589_101289 | SAMN05192589_11322 | His Kinase A (phospho-acceptor) domain-containing protein. | K+-transporting ATPase ATPase C chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex. | 0.823 |
SDC18540.1 | SDC06982.1 | SAMN05192589_101412 | SAMN05192589_101192 | PAS/PAC sensor hybrid histidine kinase. | Histidine kinase. | 0.977 |
SDC18540.1 | SDC12266.1 | SAMN05192589_101412 | SAMN05192589_101289 | PAS/PAC sensor hybrid histidine kinase. | His Kinase A (phospho-acceptor) domain-containing protein. | 0.999 |
SDC18540.1 | SDC69388.1 | SAMN05192589_101412 | SAMN05192589_1039 | PAS/PAC sensor hybrid histidine kinase. | His Kinase A (phospho-acceptor) domain-containing protein. | 0.719 |
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