STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE68826.14-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family. (275 aa)    
Predicted Functional Partners:
SDD68168.1
Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase.
  
 
 0.895
SDE66976.1
Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.875
SDD44555.1
Galactarate dehydratase.
 
 
  0.840
SDC04500.1
D-glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.824
SDD92610.1
2-keto-4-pentenoate hydratase.
 
 
 0.758
SDC04361.1
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
    
  0.716
SDC78887.1
5-carboxymethyl-2-hydroxymuconate isomerase.
  
  
 0.687
SDD80606.1
2-keto-4-pentenoate hydratase.
  
 
 0.674
SDD21707.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
     
 0.622
SDE00828.1
3-hydroxyisobutyrate dehydrogenase.
  
 
  0.621
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
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