STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE70199.1FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase. (386 aa)    
Predicted Functional Partners:
SDC73356.1
FAD/FMN-containing dehydrogenase.
  
 0.939
SDE70167.1
PKHD-type hydroxylase.
 
  
 0.900
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
 
 0.869
SDD02398.1
Lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
  
 0.833
SDD04667.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
 0.815
SDD60004.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
 0.815
SDC45135.1
FAD/FMN-containing dehydrogenase.
 
 0.777
SDE70238.1
Catecholate siderophore receptor.
 
    0.753
SDE01048.1
Aspartate aminotransferase.
  
 0.719
SDC46124.1
FAD/FMN-containing dehydrogenase.
 
 0.718
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
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