STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE76327.1YD repeat-containing protein. (120 aa)    
Predicted Functional Partners:
SDC52175.1
Hypothetical protein.
   
   0.579
SDE45660.1
Hypothetical protein.
  
 
 0.528
SDE62142.1
Hypothetical protein.
  
 
 0.528
SDE76363.1
RHS repeat-associated core domain-containing protein.
       0.465
SDE76396.1
Hypothetical protein.
       0.465
SDE47193.1
Transferase hexapeptide (six repeat-containing protein).
   
    0.443
SDE47283.1
Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family.
   
    0.443
Your Current Organism:
Acidovorax valerianellae
NCBI taxonomy Id: 187868
Other names: A. valerianellae, Acidivorax valerianellae, Acidovorax valerianellae Gardan et al. 2003, CFBP 4730, DSM 16619, NCPPB 4283
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.