STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODS42102.1Cysteine desulfurase NifS; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)    
Predicted Functional Partners:
ODS42020.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.932
ODS42917.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.925
fdhD
Hypothetical protein; Required for formate dehydrogenase (FDH) activity. Belongs to the FdhD family.
 
 0.888
ODS42101.1
TIGR00269 family protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.798
MSIBF_06205
Protein tyrosine phosphatase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.785
ODS42260.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.783
ODS42100.1
Desulfoferrodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.774
ODS42262.1
Fe-S cluster assembly ATPase SufC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.729
ODS42355.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.718
ODS43126.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.698
Your Current Organism:
Altiarchaeales archaeon
NCBI taxonomy Id: 1878999
Other names: C. Altiarchaeales archaeon IMC4, Candidatus Altiarchaeales archaeon IMC4
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