STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MSIBF_07255Fibrillarin; Involved in pre-rRNA processing; incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (186 aa)    
Predicted Functional Partners:
ODS43065.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.968
ODS42747.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.739
ODS42524.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.569
tmk
dTMP kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.553
ODS42102.1
Cysteine desulfurase NifS; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.550
ODS43031.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.547
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with a modified folate serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.499
ODS42028.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.492
ODS42522.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.478
MSIBF_06205
Protein tyrosine phosphatase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.478
Your Current Organism:
Altiarchaeales archaeon
NCBI taxonomy Id: 1878999
Other names: C. Altiarchaeales archaeon IMC4, Candidatus Altiarchaeales archaeon IMC4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.