STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCQ93279.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)    
Predicted Functional Partners:
OCQ93226.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.972
OCQ96314.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.969
OCQ94879.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.967
BCR12_04980
Macrolide ABC transporter ATP-binding protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.960
OCQ93227.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.950
OCQ89302.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.933
OCQ93963.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.847
OCQ98697.1
Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.839
OCQ89301.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.821
OCQ96167.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.819
Your Current Organism:
Limnothrix sp. P13C2
NCBI taxonomy Id: 1880902
Other names: L. sp. P13C2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.