STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC53956.116S rRNA (uracil1498-N3)-methyltransferase. (247 aa)    
Predicted Functional Partners:
SEC53994.1
Nitroalkane oxidase.
       0.903
SEC54034.1
Molecular chaperone DnaJ.
  
   0.901
SEC54073.1
Heat-inducible transcription repressor HrcA.
  
  
 0.839
SEC53876.1
RNAse Z.
     
 0.764
SEC53913.1
Histidine triad (HIT) family protein.
     
 0.764
SEC54110.1
Glyoxylase, beta-lactamase superfamily II; Manually curated.
       0.726
SEC54157.1
Protein of unknown function.
       0.689
SEC35725.1
16S rRNA (cytosine1402-N4)-methyltransferase.
 
  
 0.614
SEC50639.1
Adenosine deaminase.
       0.590
SEC76901.1
Tricorn protease.
       0.590
Your Current Organism:
Streptomyces sp. 21331
NCBI taxonomy Id: 1881021
Other names: S. sp. 2133.1, Streptomyces sp. 2133.1
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